Double, M. Cockburn, A. (2000). Pre–Dawn Infidelity: Females Control Extra-Pair Mating in Superb Fairy–Wrens. Proceedings of The Royal Society B, 267(1442): 465-470.
For Biology students in the College of Creative Studies at the University of California Santa Barbara.
Monday, May 20, 2019
Courtship & Parenting Tips from the Male Superb Fairy-Wren (Malurus cyaneus)
Double, M. Cockburn, A. (2000). Pre–Dawn Infidelity: Females Control Extra-Pair Mating in Superb Fairy–Wrens. Proceedings of The Royal Society B, 267(1442): 465-470.
Tuesday, March 12, 2019
Eye Morphology: Aquatic vs. Terrestrial
AQUATIC EYES
Underwater vision undergoes some immense evolutionary pressures: turbidity, spectrum of light penetration with depth, temperature, pressure gradients, and the presence of bioluminescence, amongst others (Anca-Narcisa, Ozana-Maria, Cuza et. al 2015). Fittingly, we see a diverse array of eye morphologies underwater, though a common feature amongst all these eyes is that the corneas lie relatively flat – since the refractive index of the surrounding water and the fluid inside the eye are pretty much equivalent, there’s no need for a highly refractive cornea (some aquatic organisms don’t even have one) (2015). Instead, the lens wields the brunt of the focusing power (2015). Eye placement, shape, and size are a variable of the amount of light at a given depth (2015).Surface fish, dolphins, shrimp, and octopi have globose eyes and high-res vision – epipelagic eyes, which have adapted to high levels of exposure, often contain different screening pigments that filter light (Evans, Acosta, Bolstad 2015; see also Frank, Porter 2009).
Meanwhile, in the mesopelagic, we start seeing a reduced visible spectrum of downwelling celestial light. Telescopic eyes start occurring at deeper depths where maximizing exposure of light on the retina becomes more favorable than flexible focusing. Screening pigments are usually absent in these deeper forms, sacrificing resolution for higher sensitivity. Most mesopelagic eyes are rod-cell dominated, as being able to distinguish different visible frequencies is less advantageous in such a dark environment. Whatever cone cells are present are often for viewing the blue light of bioluminescence.
TERRESTRIAL EYES
The first terrestrial ocular systems were presented with unique challenges. On land, the refractive index of the aqueous humor is now greater than that of the surrounding air, meaning that our first amphibious ancestors probably experienced severe nearsightedness when they first clambered to shore. Consequently, selection for strong curvature in the cornea became favorable as it accommodated for refractive differences inside and outside the eye (Anca-Narcisa, Ozana-Maria, Cuza et. al 2015). Now, focusing power becomes an interplay between both cornea and lens (2015).Terrestrial eyes are predominantly spherical, though telescopic forms do exist amongst certain nocturnal organisms (2015).
I'll end with some questions I'm planning to look into!
- What's with all the protruding tissue we see in birds and reptiles? Does it hinder light refraction onto the retina in any way?
- Does that ectodermal conus in the reptilian eye have a function? What selective advantages have shaped it this way? (Also, it is a convergent characteristic to pecten, or are the two related somehow...?)
- How many times have fovea evolved independently?
- What's with those certain fish species that can perceive UV light? What evolutionary advantages would this provide underwater?
- What kind of selective pressures drove the evolution of a 3-layered retina in lamprey eyesight? Are there other examples of parasites with good eyes, or is the lamprey a freak exception?
- Why are polychaete eyes shaped like ear endoscopes? And why are sturgeon eyes shaped like sad-looking pastries?
- Eye vs. brain size – positive or negative correlation? Would we get different answers for highly-visual vs. less-visually oriented clades?
- Compound eyes come in a huge variety of patterns, colors, lusters, facet shapes. What environmental factors/niche characteristics influence each quality?
- Determinants of pupil shape?
- When is it more advantageous to have a greater number of eyes rather than eyes that are larger/have better visual acuity and/or range of vision?
Warrant, E. Lockett, N. A. (2004). Vision in the Deep Sea. Biological Reviews 79(3):671-712.
Anca-Narcisa, N. Ozana-Maria, P. (2015). “Aquatic” vs. “Terrestrial” Eye Design – A Functional Ecomorphological Approach. Biologie animală, 61: 101-114.
Wilk, L. (2009). Mantis Shrimp Eye Structure and Function, Semantic Scholar. 1-6.
Duke-Elder, S. (1958). System of Opthalmology: The Eye in Evolution. St. Louis, Missouri: C. V. Mosby Company.
Martin, G. R. (2017). What Drives Bird Vision? Bill Control and Predator Detection Overshadow Flight. Frontiers in Neuroscience 1(11):619.
Young, J. Z. (1981). The Life of Vertebrates. Oxford, England: Clarendon.
Gelatt, K. N. (2019). Eye Structure and Function in Cats. Retrieved from https://www.merckvetmanual.com/cat-owners/eye-disorders-of-cats/eye-structure-and-function-in-cats
Fig. 3. Composite eye and ommatidies of an insect [scientific diagram]. From Ecole Polytechnique Fédérale de Lausanne. Retrieved from https://passion-entomologie.fr/wp-content/uploads/2015/12/compound_eye.jpg
Brach, V. (1977). The Functional Significance of the Avian Pecten: A Review. The Condor 79:321-327.
Palmer, B. A. Taylor, G. J. Brumfeld, V. (2017). The Image-Forming Mirror in the Eye of the Scallop. Science. 358(6367): 1172-1175.
Andison, M. E. Sivak, J. G. (1994). The functional morphology of the retractor lentis muscle of a teleost fish, Astronotus ocellatus. Canadian Journal of Zoology, 1994, 72(11): 1880-1886.
Yoshida, M. Yura, K. Ogura, A. (2014). Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants. Nature, 4 : 4256.
Evans, A. B. Acosta, M. L. (2015). Bolstad, K. S. Retinal Development and Ommin Pigment in the Cranchiid Squid Teuthowenia pellucida (Cephalopoda: Oegopsida). PLOS One, 10(5): 1-11.
Frank, T. Porter, M. (2009). Spectral sensitivity, visual pigments and screening pigments in two life history stages of the ontogenetic migrator Gnathophausia ingens. Journal of the Marine Biological Association of the United Kingdom, 89(1): 119-129.
Wednesday, March 6, 2019
Bird Journal - Brown Pelicans
SOURCES:
Department of the Interior, U.S. Fish and Wildlife Service (2009). Brown Pelican [Fact sheet]
Friday, March 9, 2012
Big dino
In addition to this question, why were some dinosaurs massive and what allowed them to reach such huge sizes.
For the answers to all these questions and more check out Rise of dinosaurs reveals major body-size transitions are driven by passive processes of trait evolution in this months Proceedings of the Royal Society B.
There's also a commentary on the DiscoveryNews website.
Benson and colleagues Roland Sookias and Richard Butler analyzed more than 400 species spanning the Late Permian to Middle Jurassic periods. The animals' pattern of growth during 100 million years supports a theory called "passive diffusion." This just means that various evolutionary lineages did a bunch of different things, from growing larger to growing smaller.
The findings counter a theory known as "Cope's rule," which claims that some groups, such as dinosaurs, tended to always evolve bigger bodies over time.
...
"Several aspects of dinosaurian biology may have allowed them to obtain larger maximum sizes than any other land animals," Benson said.
"For example, in many dinosaurs, parts of the skeleton contained air, and we think they had an efficient bird-like lung. These features helped them to support their weight on land more easily, and made their respiration and heat exchange more effective than in mammals."
Friday, February 17, 2012
Tiny terror
I don't think this story would have been picked up by the press quite as much as it has been if they hadn't included some adorable photos of grumpy looking tiny chameleons. The actual paper is in PLoS ONE this week. The photos are all over the interwebs
Rivaling the World's Smallest Reptiles: Discovery of Miniaturized and Microendemic New Species of Leaf Chameleons (Brookesia) from Northern Madagascar
Friday, February 3, 2012
Tidepool App
It's one thing to find an urchin or a fish.
It's more fun to learn that a red urchin can live for 100 years, or that the fish you've just dicovered is a baby Opaleye that can breathe air when young!
Search a database containing: photos, common and scientific names, taxonomy, description, habitat, eats and eaten by, fun facts, frequently asked questions, and more.
This iPhone app works on an iPad too! And, is a great tool for teachers, naturalists, students, and anyone who is curious about tidepool life on the California coast.
Created by the Channel Islands National Marine Sanctuary, UCSB Marine Science Institute, LiMPETS (Long-term Monitoring Program and Experiential Training for Students), and volunteers from Citrix Systems, Inc.
Thursday, April 28, 2011
Very different but very cool
and then the cephalopod - master of camouflage.
Rock-Paper-Scissors Tournaments Explain Ecological Diversity
Directly relevant to our discussion of ecological diversity, is this hot-off-the-press research co-authored by UCSB ecologist Jonathon Levine.The mystery of biodiversity –– how thousands of similar species can coexist in a single ecosystem might best be understood as the result of a massive rock-paper-scissors tournament, a new study has revealed.
From the UCSB pub, "Coastlines":
According to classical ecology, when two species compete for the same resource, eventually the more successful species will win out while the other will go extinct. But that rule cannot explain systems such as the Amazon, where thousands of tree species occupy similar ecological niches.
The childhood game of rock-paper-scissors provides one solution to this puzzle, report researchers at UC Santa Barbara and the University of Chicago in the Proceedings of the National Academy of Sciences. A mathematical model designed around the game's dynamics produced the potential for limitless biodiversity, and suggested some surprising new ecological rules. Read the article here.
The link to the original source, published in PNAS is here.
Wednesday, April 27, 2011
Museum event
The next Friends of the Santa Barbara Museum Library Lecture is Wednesday, May 11th at 7:00 PM. The evening will feature Curator of Malacology, Paul Valentich-Scott and Elizabeth Garfinkle, a San Roque High School student. Theirs is a unique research story. Read about it below.
Not just your everyday new species How does a small clam from deep water off Baja California end up being a local sensation with a Santa Barbara teenager? Collaborators Paul Valentich-Scott, Curator of Malacology, and Elizabeth Garfinkle, a junior at San Roque High School, will present their recently published research describing a new species of clam. The pair will discuss the initial discovery of the new bivalve and its surprising links to the past of central California.
Elizabeth is one of the few high school students globally who has described a new species. Her achievement has been chronicled in many local media outlets from San Luis Obispo to Los Angeles. She took top honors at the 2011 Santa Barbara County Science Fair for this unique project. Come meet Paul and Elizabeth and learn more about the exciting journey that led to a new species being described in a zoology journal from New Zealand.
Admission is free but you need to make a reservation by e-mailing Terri Sheridan at tsheridan@sbnature2.org or (805) 682-4711 ext. 134
Thursday, April 21, 2011
Speaking of ecosystems...
"We found that the combination of microbes in the human intestine isn't random," says Peer Bork, who led the study at EMBL: "our gut flora can settle into three different types of community -- three different ecosystems, if you like."
Report at ScienceDaily and the paper, Enterotypes of the human gut microbiome, is published in nature this week.
Friday, April 8, 2011
Proteus
Chasing Haeckel - A documentary centered on Ernst Haeckel's drawings of radiolarians sets the unity of art and science in motion
Selections from the the film Proteus, a documentary concerning the life, work, and philosophy of Ernst Haeckel, a 19th century naturalist. The film tells of the man's character and influences while using his detailed engravings of Radiolaria, single celled marine organisms, to make animated progressions
Thursday, February 3, 2011
All your fly base are belong to us
Over one hundred of these Drosophila species are members of the 'picture wing group'. The figure I showed in class just depicts the hypothesized dispersal events necessary to create the 112 members of the picture wing group. Although the picture wing species are quite distinct from each other in morphology, pigmentation, and behavior it is now known that this explosive adaptive radiation occurred with relatively little change in DNA sequence. These factors make the Hawaiian Drosophila an important model system for analysis of evolutionary processes at the species level.
Learn more at FlyBase - A Database of Wing Diversity in the Hawaiian Drosophila
Saturday, January 29, 2011
Every second breath...
Wednesday, January 19, 2011
National Geographic Photos
(Just for fun) :)
http://photography.nationalgeographic.com/photography/photos/underwater-oddities/#/pacific-octopus-eye-grall_18495_600x450.jpg
Tuesday, November 9, 2010
Carcinonemertes kurisi
UCSB zoology professor Armand Kuris has received one of the greatest honors biologists can hope for — having a newly discovered species named after him.
Carcinonemertes kurisi, a species of ribbon worm, was first found and documented by Kuris and Patricia Sadeghian, one of his former students. Sadeghian wrote her Master’s thesis on the species in 2003 and then named the ribbon worm after Kuris in an October 2010 issue of the Journal of Natural History after producing a formal description of the worm.
Friday, May 7, 2010
City of gonads
The new species has been named Csiromedusa medeopolis, meaning "jellyfish from CSIRO" and "city of gonads" and is so different from other jellyfish that it has been placed into a new family.
Thursday, April 8, 2010
Anaerobic metazoan
Sandwiched between 'Earliest known Led Zeppelin recording' and 'Evolutionary Psychology Bingo' on BoingBoing is A multicellular organism that lives without oxygen.This is based on a paper in BMC Biology entitled The first metazoa living in permanently anoxic conditions.
This is the first evidence of a metazoan life cycle that is spent entirely in permanently anoxic sediments. Our findings allow us also to conclude that these metazoans live under anoxic conditions through an obligate anaerobic metabolism that is similar to that demonstrated so far only for unicellular eukaryotes. The discovery of these life forms opens new perspectives for the study of metazoan life in habitats lacking molecular oxygen.
Saturday, March 6, 2010
Squid friends

Sunday, March 1, 2009
Toco Toucan Tradeoff
I was doing some reading about Toucans. I confess I was never this enthusiastic as a student but these days I seem to be finding everything interesting. Anyway, I came across this curious conservation paper: Conservation puzzle: Endangered hyacinth macaw depends on its nest predator for reproduction.
In the Pantanal wetlands of Central Brazil, the endangered hyacinth macaw (Anodorhynchus hyacinthinus), the largest psitacid in the world, makes its nest almost exclusively in natural hollows found in the manduvi tree (Sterculia apetala). The recruitment of manduvis greatly depends on the seed dispersal services provided by the toco toucan (Ramphastos toco), responsible for 83.3% of the seed dispersal. The toco toucan, however, is responsible for about 53% of the preyed eggs, resulting in a case of conflicting ecological pressures in which the reproduction of the hyacinth macaw is indirectly dependent on the seed dispersal services of its nest predator.
Wednesday, February 25, 2009
Freaky frogfish
It's been a while since we had a crazy critter here - although we did see some bizarre plants on Saturday.This new species of frogfish uses its leg like pectoral fins to crawl - that is when it isn't bouncing around like a rubber ball. See yesterdays University of Washington press release for information and some great photos and video.
Members of Histiophryne psychedelica, or H. psychedelica, don't so much swim as hop. Each time they strike the seafloor they use their fins to push off and they expel water from tiny gill openings on their sides to jet themselves forward. With tails curled tightly to one side --which surely limits their ability to steer -- they look like inflated rubber balls bouncing hither and thither.







