Friday, October 15, 2010

Lab opportunity

Subject: Freshman/Sophomore Lab Position Available in Collin's Lab

Research Project:
The overall research is to determine the influence of environmental and hormonal factors on the constituent phase of embryo and larval development as they occur within the ovaries of viviparous nearshore rockfish(Sebastes spp)

Undergraduate Contribution:
The undergraduate will be responsible for validating protocols for incubating embryos and larvae aspirated from the ovaries of rockfish at various stages of development. The student will carry out incubations at different osmolalities and in the presence of various potential growth promoting factors. The student will assess development by morphometric analysis of fresh specimens and histological sections.

If you are interested, please contact Adam Karevoll at
akarevoll at

Monday, October 11, 2010

Dance your Ph.D.

"The dreaded question. "So, what's your Ph.D. research about?" You could bore them with an explanation. Or you could dance.
That's the idea behind "Dance Your Ph.D." Over the past 3 years, scientists from around the world have teamed up to create dance videos based on their graduate research."
Thought you all might enjoy this! A good way to both relieve stress and study science at the same time... Enjoy :)

Wednesday, October 6, 2010

Seeing is believing

I know at least one of you mentioned an interest in stem cells. The MCDB seminar looks like it might be of interest:

MCDB Seminar
Speaker: Pete Coffey
Head of Ocular Biology & Therapeutics
Professor, Cellular Therapy and Visual Sciences
Director, London Project to Cure Blindness

Title: "Stemming Vision Loss Using Stem Cells - Seeing Is Believing"
Location: Rathmann Auditorium, LSB 1001
Thursday October 7th 3:30 p.m. - 4:30 p.m.

Friday, October 1, 2010


We don't get a lot of biomechanics talks here so I'll highlight this one. There was a nice article about this work at ScienceDaily recently.

Swimming and filtration in the ocean by jet-propelled salps
Dr. Kelly R. Sutherland
Postdoctoral Scholar in Bioengineering, California Institute of Technology

Engineering Sciences Building, ESB 1001
Thursday, October 4th, 4.00 p.m.

Salps are barrel-shaped marine organisms that are common in the open ocean and swim using a pulsed jet.  Among salp species, there are a variety of body shapes and swimming styles that correspond to differences in ecological function.  Dye visualization via bluewater SCUBA techniques and laboratory Digital Particle Image Velocimetry (DPIV) were used to describe jet wake structure and swimming performance variables including thrust, drag and propulsive efficiency among three salp species (Pegea confoederata, Weelia (Salpa) cylindrica, Cyclosalpa sp.).  Locomotion by each species was achieved using vortex ring ring propulsion.   Different combinations of swimming speed and hydrodynamic efficiency were observed and can be considered in light of metabolic constraints and ecological roles.  Though nature does not strive for optimality, this work shows the value of a comparative approach for understanding how underlying structure and mechanism influence performance.     

During swimming, the same fluid that propels the salp forward also contains food particles, which are captured on a mucous mesh as fluid passes through the mostly hollow body.  Though salps are centimeters in length and swim at speeds of ~1-10 cm s-1, filtration occurs on a fine, mucous mesh (fiber diameter ~0.1 μm) at low velocity (1.6 cm s−1) and is thus a low Reynolds number (Re ~10−3) process.  A model of particle capture efficiency by a rectangular mesh was used to estimate particle capture rates on the salp filtering mesh based on realistic oceanic particle concentrations.  Particle feeding experiments using 0.5, 1 and 3 µm fluorescent polystyrene microspheres were then performed to test the theoretical model.  Results from both the model and from experiments showed that smaller particles are captured at considerably higher rates than larger particles.  Though particles smaller than mesh openings (1.4 µm) are expected to supply substantially less carbon than larger particles, they can still completely satisfy salp energetic needs.  By removing different sized particles with nonuniform efficiency and packaging them into fast-sinking fecal pellets, salps have the potential to structure oceanic particle size spectra.